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GrainGenes Marker Report: POPA1_1309

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Locus	POPA1_1309
Type	SNP
Synonym	Other name 12_11309 BOPA2_12_11309 Synonym 12_11309
Chromosome	7H
Chromosome Arm	7HL
Map	Hordeum-OPA-2009-7H 148.25 Hordeum-OPA123-2008-7H 148.25 Hordeum-OPAConsensus-2011-7H 151.1 Hordeum-OWB-OPA2008-7H 169.345
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_539 i_12_11309
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_1309 Marker name in barley OPA1 = 12_11309 Original SNP name = ABC12986-1-3-308 Most representative HarvEST:Barley Assembly #32 Unigene = 10214 Most representative HarvEST:Barley Assembly #35 Unigene = 539 HarvEST Unigene 35 Probe Set = Contig12986_at; Contig6483_at; Contig6483_s_at Unigene 35 Rice Locus = LOC_Os01g42110 Description for best rice BLAST hit to Unigene 35 member = seven-transmembrane-domain protein 1, putative; E value = 1E-106 Marker name in barley OPA2 = 12_11309 HarvEST Unigene 35 Probe Set = Contig12986_at, Contig6483_at, Contig6483_s_at Description for best rice BLAST hit to Unigene 35 member = protein seven-transmembrane-domain protein 1, putative; E value = 1E-106 BLAST hit in the rice genome = seven-transmembrane-domain protein 1, putative
Probe for Locus	HAR35_539
Locus	POPA1_1309
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare