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GrainGenes Marker Report: POPA1_1313

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Locus	POPA1_1313
Type	SNP
Synonym	Other name 11_11313 BOPA1_11_11313 BOPA1_ABC13089-1-2-478 Synonym 11_11313
Chromosome	3H
Chromosome Arm	3HS
Map	Hordeum-OPA-2009-3H 51.73 Hordeum-OPA123-2008-3H 51.73 Hordeum-OPAConsensus-2011-3H 63.25
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_4016 i_11_11313
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_1313 Marker name in barley OPA1 = 11_11313 Original SNP name = ABC13089-1-2-478 Most representative HarvEST:Barley Assembly #32 Unigene = 10271 Most representative HarvEST:Barley Assembly #35 Unigene = 4016 HarvEST Unigene 35 Probe Set = Contig13089_at Unigene 35 Rice Locus = LOC_Os01g12660 Description for best rice BLAST hit to Unigene 35 member = ATP binding protein, putative, expressed; E value = 0 Description for best rice BLAST hit to Unigene 35 member = protein ATP binding protein, putative, expressed; E value = 0 BLAST hit in the rice genome = ATP binding protein, putative, expressed
Probe for Locus	HAR35_4016
Locus	POPA1_1313
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare