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GrainGenes Marker Report: POPA1_1325

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Locus
POPA1_1325
Type
SNP
Synonym
Other name12_11325
BOPA2_12_11325
Synonym12_11325
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H161.58
Hordeum-OPA123-2008-5H161.58
Hordeum-OPAConsensus-2011-5H157.61
Hordeum-OWB-OPA2008-5H196.153
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_20850
i_12_11325
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 1_1325
Marker name in barley OPA1 = 12_11325
Original SNP name = ABC13614-1-1-320
Most representative HarvEST:Barley Assembly #32 Unigene = 10513
Most representative HarvEST:Barley Assembly #35 Unigene = 20850
HarvEST Unigene 35 Probe Set = Contig13614_at
Unigene 35 Rice Locus = LOC_Os03g59750
Description for best rice BLAST hit to Unigene 35 member = DNA gyrase subunit A, putative, expressed; E value = 1E-155
Marker name in barley OPA2 = 12_11325
Original SNP name = ABC11039_1_102
Description for best rice BLAST hit to Unigene 35 member = protein DNA gyrase subunit A, putative, expressed; E value = 1E-155
BLAST hit in the rice genome = DNA gyrase subunit A, putative, expressed


Probe for Locus
HAR35_20850
Locus
POPA1_1325
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare