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GrainGenes Marker Report: POPA1_1328

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Locus	POPA1_1328
Type	SNP
Synonym	Other name 11_11328 BOPA1_11_11328 BOPA1_ABC13678-1-2-369 Synonym 11_11328
Chromosome	3H
Chromosome Arm	3HL
Map	Hordeum-OPA-2009-3H 138.83 Hordeum-OPA123-2008-3H 138.83 Hordeum-OPAConsensus-2011-3H 147.57 Hordeum-OWB-OPA2008-3H 167.204
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_4863 i_11_11328
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_1328 Marker name in barley OPA1 = 11_11328 Original SNP name = ABC13678-1-2-369 Most representative HarvEST:Barley Assembly #32 Unigene = 10870 Most representative HarvEST:Barley Assembly #35 Unigene = 4863 HarvEST Unigene 35 Probe Set = Contig13678_at; Contig13678_s_at Unigene 35 Rice Locus = LOC_Os01g70310 Description for best rice BLAST hit to Unigene 35 member = inducer of CBF expression 2, putative, expressed; E value = 1E-115 HarvEST Unigene 35 Probe Set = Contig13678_at, Contig13678_s_at Description for best rice BLAST hit to Unigene 35 member = protein inducer of CBF expression 2, putative, expressed; E value = 1E-115 BLAST hit in the rice genome = inducer of CBF expression 2, putative, expressed
Probe for Locus	HAR35_4863
Locus	POPA1_1328 POPA3_0860
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare