Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_1339

[Submit comment/correction]

Locus	POPA1_1339
Type	SNP
Synonym	Other name 12_11339 BOPA2_12_11339 Synonym 12_11339
Chromosome	7H
Chromosome Arm	7HS
Map	Hordeum-OPA-2009-7H 48.13 Hordeum-OPA123-2008-7H 48.13 Hordeum-OPAConsensus-2011-7H 40.48 Hordeum-OWB-OPA2008-7H 46.527
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_21557 i_12_11339
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_1339 Marker name in barley OPA1 = 12_11339 Original SNP name = ABC14309-1-1-132 Most representative HarvEST:Barley Assembly #32 Unigene = 11690 Most representative HarvEST:Barley Assembly #35 Unigene = 21557 HarvEST Unigene 35 Probe Set = Contig14309_at Unigene 35 Rice Locus = LOC_Os06g07820 Description for best rice BLAST hit to Unigene 35 member = BSD domain containing protein, expressed; E value = 1E-105 Marker name in barley OPA2 = 12_11339 Description for best rice BLAST hit to Unigene 35 member = protein BSD domain containing protein, expressed; E value = 1E-105 BLAST hit in the rice genome = BSD domain containing protein, expressed
Probe for Locus	HAR35_21557
Locus	POPA1_1339
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare