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GrainGenes Marker Report: POPA1_1343

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Locus	POPA1_1343
Type	SNP
Synonym	Other name 11_11343 BOPA1_11_11343 BOPA1_ABC14397-1-2-208 Synonym 11_11343
Chromosome	7H
Chromosome Arm	7HL
Map	Hordeum-OPAConsensus-2011-7H 96.18
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_21352 i_11_11343
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_1343 Marker name in barley OPA1 = 11_11343 Original SNP name = ABC14397-1-2-208 Most representative HarvEST:Barley Assembly #32 Unigene = 11847 Most representative HarvEST:Barley Assembly #35 Unigene = 21352 HarvEST Unigene 35 Probe Set = Contig14397_at Unigene 35 Rice Locus = LOC_Os06g35630 Description for best rice BLAST hit to Unigene 35 member = reticuline oxidase precursor, putative, expressed; E value = 2E-65 BLAST hit in the rice genome = reticuline oxidase precursor, putative, expressed
Probe for Locus	HAR35_21352
Locus	POPA1_1343