Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_1345

[Submit comment/correction]

Locus	POPA1_1345
Type	SNP
Synonym	Synonym 11_11345
Chromosome	4H
Chromosome Arm	4HS
Map	Hordeum-OPA-2009-4H 5.55 Hordeum-OPA123-2008-4H 5.55 Hordeum-OPAConsensus-2011-4H 5.23
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_21197
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_1345 Marker name in barley OPA1 = 11_11345 Original SNP name = ABC14522-1-8-350 Most representative HarvEST:Barley Assembly #32 Unigene = 11523 Most representative HarvEST:Barley Assembly #35 Unigene = 21197 HarvEST Unigene 35 Probe Set = Contig14522_at Unigene 35 Rice Locus = LOC_Os03g45390 Description for best rice BLAST hit to Unigene 35 member = glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed; E value = 4E-88 Description for best rice BLAST hit to Unigene 35 member = protein glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed; E value = 4E-88 BLAST hit in the rice genome = glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
Probe for Locus	HAR35_21197
Locus	POPA1_1345
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare