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GrainGenes Marker Report: POPA1_1346

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Locus	POPA1_1346
Type	SNP
Synonym	Other name 11_11346 BOPA1_11_11346 BOPA1_ABC14531-1-2-91 Synonym 11_11346
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPAConsensus-2011-2H 114.34
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_20406 i_11_11346
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_1346 Marker name in barley OPA1 = 11_11346 Original SNP name = ABC14531-1-2-91 Most representative HarvEST:Barley Assembly #32 Unigene = 11451 Most representative HarvEST:Barley Assembly #35 Unigene = 20406 HarvEST Unigene 35 Probe Set = Contig14531_at; HVSMEi0007J05r2_s_at Unigene 35 Rice Locus = LOC_Os04g52330 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 1E-128 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_20406
Locus	POPA1_1346