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GrainGenes Marker Report: POPA1_1352

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Locus	POPA1_1352
Type	SNP
Synonym	Other name 11_11352 BOPA1_11_11352 BOPA1_ABC14818-1-1-296 Synonym 11_11352
Chromosome	7H
Chromosome Arm	7HL
Map	Barley, 2012 9KSNP 7H 71 Hordeum-OPA-2009-7H 79.6 Hordeum-OPA123-2008-7H 79.6 Hordeum-OPAConsensus-2011-7H 81.78 Hordeum-OWB-OPA2008-7H 80.664
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_21498 i_11_11352
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_1352 Marker name in barley OPA1 = 11_11352 Original SNP name = ABC14818-1-1-296 Most representative HarvEST:Barley Assembly #32 Unigene = 12000 Most representative HarvEST:Barley Assembly #35 Unigene = 21498 HarvEST Unigene 35 Probe Set = Contig14818_at Unigene 35 Rice Locus = LOC_Os08g04300 Description for best rice BLAST hit to Unigene 35 member = protein transferase, transferring glycosyl groups, putative, expressed; E value = 1E-167 BLAST hit in the rice genome = transferase, transferring glycosyl groups, putative, expressed
Probe for Locus	HAR35_21498
Locus	POPA1_1352
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare