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GrainGenes Marker Report: POPA1_1357

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Locus	POPA1_1357
Type	SNP
Synonym	Other name 12_11357 BOPA2_12_11357 Synonym 12_11357
Chromosome	1H
Chromosome Arm	1HS
Map	Hordeum-OPA-2009-1H 36.95 Hordeum-OPA123-2008-1H 36.95 Hordeum-OPAConsensus-2011-1H 30.15 Hordeum-OWB-OPA2008-1H 51.042
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_7188 i_12_11357
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_1357 Marker name in barley OPA1 = 12_11357 Original SNP name = ABC15151-1-1-403 Most representative HarvEST:Barley Assembly #32 Unigene = 11925 Most representative HarvEST:Barley Assembly #35 Unigene = 7188 HarvEST Unigene 35 Probe Set = Contig15151_at Unigene 35 Rice Locus = LOC_Os07g22650 Description for best rice BLAST hit to Unigene 35 member = xylulokinase, putative, expressed; E value = 0.000000003 Marker name in barley OPA2 = 12_11357 Original SNP name = U35_17276_547 Description for best rice BLAST hit to Unigene 35 member = protein xylulokinase, putative, expressed; E value = 0.000000003 BLAST hit in the rice genome = xylulokinase, putative, expressed
Probe for Locus	HAR35_7188
Locus	POPA1_1357
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare