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GrainGenes Marker Report: POPA1_1368

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Locus	POPA1_1368
Type	SNP
Synonym	Other name 12_11368 BOPA2_12_11368 Synonym 12_11368
Chromosome	2H
Map	Hordeum-OPAConsensus-2011-2H 160.46
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_20945 i_12_11368
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_1368 Marker name in barley OPA1 = 12_11368 Original SNP name = ABC16528-pHv407 Most representative HarvEST:Barley Assembly #32 Unigene = 13124 Most representative HarvEST:Barley Assembly #35 Unigene = 20945 HarvEST Unigene 35 Probe Set = Contig16528_at Unigene 35 Rice Locus = LOC_Os04g58350 Description for best rice BLAST hit to Unigene 35 member = TFIIH basal transcription factor complex p52 subunit, putative, expressed; E value = 7E-93 BLAST hit in the rice genome = TFIIH basal transcription factor complex p52 subunit, putative, expressed
Probe for Locus	HAR35_20945
Locus	POPA1_1368