GrainGenes Marker Report: POPA1_1371
Locus
POPA1_1371
Type
SNP
Chromosome
3H
Chromosome Arm
3HS
Map
Barley-Core-2014_3H 53.13 Hordeum-OPA-2009-3H 44.76 Hordeum-OPA123-2008-3H 44.76 Hordeum-OPAConsensus-2011-3H 48.88
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_21316
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_1371 Most representative HarvEST:Barley Assembly #32 Unigene = 15336 Most representative HarvEST:Barley Assembly #35 Unigene = 21316 HarvEST Unigene 35 Probe Set = Contig16710_at Unigene 35 Rice Locus = LOC_Os07g18230 Description for best rice BLAST hit to Unigene 35 member = lectin receptor-type protein kinase, putative, expressed; E value = 1E-119 Original SNP name = ABC16710-1-6-295 Description for best rice BLAST hit to Unigene 35 member = protein lectin receptor-type protein kinase, putative, expressed; E value = 1E-119 BLAST hit in the rice genome = lectin receptor-type protein kinase, putative, expressed
Probe for Locus
HAR35_21316
Locus
POPA2_1506 POPA1_1371
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA1_1371
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