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GrainGenes Marker Report: POPA1_1375

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Locus	POPA1_1375
Type	SNP
Synonym	Other name 11_11375 BOPA1_11_11375 BOPA1_ABC17073-1-1-298 Synonym 11_11375
Chromosome	5H
Chromosome Arm	5HL
Map	Barley, 2012 9KSNP 5H 120.8 Hordeum-OPA-2009-5H 130.84 Hordeum-OPA123-2008-5H 130.84 Hordeum-OPAConsensus-2011-5H 123.12
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_8573 i_11_11375
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_1375 Marker name in barley OPA1 = 11_11375 Original SNP name = ABC17073-1-1-298 Most representative HarvEST:Barley Assembly #32 Unigene = 14484 Most representative HarvEST:Barley Assembly #35 Unigene = 8573 HarvEST Unigene 35 Probe Set = Contig17073_at Unigene 35 Rice Locus = LOC_Os03g40020 Description for best rice BLAST hit to Unigene 35 member = rf1 protein, mitochondrial precursor, putative, expressed; E value = 3E-93 Description for best rice BLAST hit to Unigene 35 member = protein rf1 protein, mitochondrial precursor, putative, expressed; E value = 3E-93 BLAST hit in the rice genome = rf1 protein, mitochondrial precursor, putative, expressed
Probe for Locus	HAR35_8573
Locus	POPA1_1375
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare