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GrainGenes Marker Report: POPA1_1381

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Locus	POPA1_1381
Type	SNP
Synonym	Synonym 11_11381
Chromosome	5H
Chromosome Arm	5HS
Map	Hordeum-OPA-2009-5H 7.48 Hordeum-OPA123-2008-5H 7.48 Hordeum-OPAConsensus-2011-5H 8.25
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_7624
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_1381 Marker name in barley OPA1 = 11_11381 Original SNP name = ABC17471-1-3-78 Most representative HarvEST:Barley Assembly #32 Unigene = 13831 Most representative HarvEST:Barley Assembly #35 Unigene = 7624 HarvEST Unigene 35 Probe Set = Contig17471_at Unigene 35 Rice Locus = LOC_Os12g43720 Description for best rice BLAST hit to Unigene 35 member = RXW8, putative, expressed; E value = 1E-134 Description for best rice BLAST hit to Unigene 35 member = protein RXW8, putative, expressed; E value = 1E-134 BLAST hit in the rice genome = RXW8, putative, expressed
Probe for Locus	HAR35_7624
Locus	POPA1_1381
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare