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GrainGenes Marker Report: POPA1_1382

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Locus	POPA1_1382
Type	SNP
Synonym	Other name 12_11382 BOPA2_12_11382 Synonym 12_11382
Chromosome	4H
Chromosome Arm	4HS
Map	Hordeum-OPA-2009-4H 37.87 Hordeum-OPA123-2008-4H 37.87 Hordeum-OPAConsensus-2011-4H 42.22
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_7417 i_12_11382
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_1382 Marker name in barley OPA1 = 12_11382 Original SNP name = ABC17649-1-5-464 Most representative HarvEST:Barley Assembly #32 Unigene = 13621 Most representative HarvEST:Barley Assembly #35 Unigene = 7417 HarvEST Unigene 35 Probe Set = Contig17649_at Unigene 35 Rice Locus = LOC_Os03g52280 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 0.0000000000000001 Marker name in barley OPA2 = 12_11382 Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 0.0000000000000001 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_7417
Locus	POPA1_1382
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare