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GrainGenes Marker Report: POPA1_1383

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Locus	POPA1_1383
Type	SNP
Synonym	Other name 12_11383 BOPA2_12_11383 Synonym 12_11383
QTL with Locus Marker	MQTL_Du2024.yield-2H.13
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_7974 i_12_11383
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_1383 Marker name in barley OPA1 = 12_11383 Original SNP name = ABC17672-1-2-159 Most representative HarvEST:Barley Assembly #32 Unigene = 14580 Most representative HarvEST:Barley Assembly #35 Unigene = 7974 HarvEST Unigene 35 Probe Set = Contig17672_at Unigene 35 Rice Locus = LOC_Os04g57950 Description for best rice BLAST hit to Unigene 35 member = dihydroorotate dehydrogenase, mitochondrial precursor, putative, expressed; E value = 1E-160 BLAST hit in the rice genome = dihydroorotate dehydrogenase, mitochondrial precursor, putative, expressed
Probe for Locus	HAR35_7974
Locus	POPA1_1383