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GrainGenes Marker Report: POPA1_1386

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Locus	POPA1_1386
Type	SNP
Synonym	Other name 12_11386 BOPA2_12_11386 Synonym 12_11386
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_20214 i_12_11386
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_1386 Marker name in barley OPA1 = 12_11386 Original SNP name = ABC18140-1-1-43 Most representative HarvEST:Barley Assembly #32 Unigene = 14725 Most representative HarvEST:Barley Assembly #35 Unigene = 20214 HarvEST Unigene 35 Probe Set = Contig18140_at; EBem09_SQ007_D05_s_at Unigene 35 Rice Locus = LOC_Os02g44770 Description for best rice BLAST hit to Unigene 35 member = mechanosensitive ion channel family protein, expressed; E value = 3E-77 BLAST hit in the rice genome = mechanosensitive ion channel family protein, expressed
Probe for Locus	HAR35_20214
Locus	POPA1_1386 POPA2_1510