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GrainGenes Marker Report: POPA1_1388

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Locus	POPA1_1388
Type	SNP
Synonym	Other name 12_11388 BOPA2_12_11388 Synonym 12_11388
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPA-2009-2H 78.03 Hordeum-OPA123-2008-2H 78.03 Hordeum-OPAConsensus-2011-2H 89.68 Hordeum-OWB-OPA2008-2H 94.662
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_21925 i_12_11388
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_1388 Marker name in barley OPA1 = 12_11388 Original SNP name = ABC18508-1-4-343 Most representative HarvEST:Barley Assembly #32 Unigene = 14210 Most representative HarvEST:Barley Assembly #35 Unigene = 21925 HarvEST Unigene 35 Probe Set = Contig18508_at Unigene 35 Rice Locus = LOC_Os07g04930 Description for best rice BLAST hit to Unigene 35 member = vegetative cell wall protein gp1 precursor, putative, expressed; E value = 3E-41 Marker name in barley OPA2 = 12_11388 Description for best rice BLAST hit to Unigene 35 member = protein vegetative cell wall protein gp1 precursor, putative, expressed; E value = 3E-41 BLAST hit in the rice genome = vegetative cell wall protein gp1 precursor, putative, expressed
Probe for Locus	HAR35_21925
Locus	POPA1_1388
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare