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GrainGenes Marker Report: POPA1_1391

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Locus	POPA1_1391
Type	SNP
Synonym	Synonym 11_11391
Chromosome	3H
Chromosome Arm	3HL
Map	Hordeum-OPA-2009-3H 65.52 Hordeum-OPA123-2008-3H 65.52 Hordeum-OPAConsensus-2011-3H 77.37
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_8186
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_1391 Marker name in barley OPA1 = 11_11391 Original SNP name = ABC18717-1-3-215 Most representative HarvEST:Barley Assembly #32 Unigene = 16481 Most representative HarvEST:Barley Assembly #35 Unigene = 8186 HarvEST Unigene 35 Probe Set = Contig18717_at Unigene 35 Rice Locus = LOC_Os01g51890 Description for best rice BLAST hit to Unigene 35 member = inositol-1,4,5-trisphosphate 5-Phosphatase, putative, expressed; E value = 9E-72 Description for best rice BLAST hit to Unigene 35 member = protein inositol-1,4,5-trisphosphate 5-Phosphatase, putative, expressed; E value = 9E-72 BLAST hit in the rice genome = inositol-1,4,5-trisphosphate 5-Phosphatase, putative, expressed
Probe for Locus	HAR35_8186
Locus	POPA1_1391
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare