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GrainGenes Marker Report: POPA1_1398

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Locus
POPA1_1398
Type
SNP
Synonym
Other name11_11398
BOPA1_11_11398
BOPA1_ABC20090-1-1-275
Synonym11_11398
Chromosome
4H
Chromosome Arm
4HL
Map
Hordeum-OPA-2009-4H87.49
Hordeum-OPA123-2008-4H87.49
Hordeum-OPAConsensus-2011-4H97.05
Hordeum-OWB-OPA2008-4H84.235
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_9496
i_11_11398
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 1_1398
Marker name in barley OPA1 = 11_11398
Original SNP name = ABC20090-1-1-275
Most representative HarvEST:Barley Assembly #32 Unigene = 16705
Most representative HarvEST:Barley Assembly #35 Unigene = 9496
HarvEST Unigene 35 Probe Set = Contig20090_at
Unigene 35 Rice Locus = LOC_Os03g37260
Description for best rice BLAST hit to Unigene 35 member = ATP binding protein, putative, expressed; E value = 3E-71
Description for best rice BLAST hit to Unigene 35 member = protein ATP binding protein, putative, expressed; E value = 3E-71
BLAST hit in the rice genome = ATP binding protein, putative, expressed


Probe for Locus
HAR35_9496
Locus
POPA1_1398
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare