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GrainGenes Marker Report: POPA1_1399

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Locus	POPA1_1399
Type	SNP
Synonym	Other name 12_11399 BOPA2_12_11399 Synonym 12_11399
Chromosome	5H
Chromosome Arm	5HS
Map	Hordeum-OPA-2009-5H 51 Hordeum-OPA123-2008-5H 51 Hordeum-OPAConsensus-2011-5H 42.41 Hordeum-OWB-OPA2008-5H 58.35
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_9984 i_12_11399
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_1399 Marker name in barley OPA1 = 12_11399 Original SNP name = ABC20253-1-1-202 Most representative HarvEST:Barley Assembly #32 Unigene = 16719 Most representative HarvEST:Barley Assembly #35 Unigene = 9984 HarvEST Unigene 35 Probe Set = Contig20253_at Unigene 35 Rice Locus = LOC_Os12g30040 Description for best rice BLAST hit to Unigene 35 member = amino acid transporter-like protein 1, putative, expressed; E value = 1E-137 Marker name in barley OPA2 = 12_11399 Description for best rice BLAST hit to Unigene 35 member = protein amino acid transporter-like protein 1, putative, expressed; E value = 1E-137 BLAST hit in the rice genome = amino acid transporter-like protein 1, putative, expressed
Probe for Locus	HAR35_9984
Locus	POPA1_1399
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare