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GrainGenes Marker Report: POPA1_1405

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Locus	POPA1_1405
Type	SNP
Synonym	Other name 11_11405 BOPA1_11_11405 BOPA1_ABC24906-1-1-279 Synonym 11_11405
Chromosome	4H
Chromosome Arm	4HS
Map	Barley, 2012 9KSNP 4H 49.9 Hordeum-OPA-2009-4H 47.6 Hordeum-OPA123-2008-4H 47.6 Hordeum-OPAConsensus-2011-4H 53.28
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_25374 i_11_11405
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_1405 Marker name in barley OPA1 = 11_11405 Original SNP name = ABC24906-1-1-279 Most representative HarvEST:Barley Assembly #32 Unigene = 19743 Most representative HarvEST:Barley Assembly #35 Unigene = 25374 HarvEST Unigene 35 Probe Set = Contig24906_at Unigene 35 Rice Locus = LOC_Os11g14980 Description for best rice BLAST hit to Unigene 35 member = selenium-binding protein-like, putative, expressed; E value = 1E-166 Description for best rice BLAST hit to Unigene 35 member = protein selenium-binding protein-like, putative, expressed; E value = 1E-166 BLAST hit in the rice genome = selenium-binding protein-like, putative, expressed
Probe for Locus	HAR35_25374
Locus	POPA1_1405
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare