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GrainGenes Marker Report: POPA1_1407

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Locus	POPA1_1407
Type	SNP
Chromosome	2H
Chromosome Arm	2HS
Map	Hordeum-OPA-2009-2H 0 Hordeum-OPA123-2008-2H 0 Hordeum-OWB-OPA2008-2H 1.12
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_9875
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_1407 Most representative HarvEST:Barley Assembly #32 Unigene = 21504 Most representative HarvEST:Barley Assembly #35 Unigene = 9875 HarvEST Unigene 35 Probe Set = Contig25477_at Unigene 35 Rice Locus = LOC_Os08g16260 Description for best rice BLAST hit to Unigene 35 member = cytochrome P450 86A1, putative, expressed; E value = 2E-65 Original SNP name = ABC25477-1-1-242 Original SNP name = U35_4853_243 Description for best rice BLAST hit to Unigene 35 member = protein cytochrome P450 86A1, putative, expressed; E value = 2E-65 BLAST hit in the rice genome = cytochrome P450 86A1, putative, expressed
Probe for Locus	HAR35_9875
Locus	POPA1_1407
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare