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GrainGenes Marker Report: POPA1_1414

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Locus	POPA1_1414
Type	SNP
Synonym	Other name 12_11414 BOPA2_12_11414 Synonym 12_11414
Chromosome	3H
Chromosome Arm	3HS
Map	Hordeum-OPA-2009-3H 32.83 Hordeum-OPA123-2008-3H 32.83 Hordeum-OPAConsensus-2011-3H 34.15
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_50174 i_12_11414
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_1414 Marker name in barley OPA1 = 12_11414 Original SNP name = ABC52215-pHv1348-01 Most representative HarvEST:Barley Assembly #32 Unigene = 40993 Most representative HarvEST:Barley Assembly #35 Unigene = 50174 HarvEST Unigene 35 Probe Set = Unigene 35 Rice Locus = LOC_Os01g05490 Marker name in barley OPA2 = 12_11414 Description for best rice BLAST hit to Unigene 35 member = protein triosephosphate isomerase, cytosolic, putative, expressed; E value = 4E-35 BLAST hit in the rice genome = triosephosphate isomerase, cytosolic, putative, expressed
Probe for Locus	HAR35_50174
Locus	POPA1_1414
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare