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GrainGenes Marker Report: POPA1_1433

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Locus	POPA1_1433
Type	SNP
Synonym	Synonym 12_11433
Chromosome	7H
Chromosome Arm	7HS
Map	Hordeum-OPA-2009-7H 6.78 Hordeum-OPA123-2008-7H 6.78 Hordeum-OPAConsensus-2011-7H 7.33
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_1176
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_1433 Marker name in barley OPA1 = 12_11433 Original SNP name = ConsensusGBS0021-5 Most representative HarvEST:Barley Assembly #32 Unigene = 2279 Most representative HarvEST:Barley Assembly #35 Unigene = 1176 HarvEST Unigene 35 Probe Set = Contig3326_s_at; HS08M08u_s_at; HW03M24u_at Unigene 35 Rice Locus = LOC_Os06g02550 Description for best rice BLAST hit to Unigene 35 member = serine/threonine-protein kinase MAK, putative, expressed; E value = 0 Marker name in barley OPA2 = 12_11433 HarvEST Unigene 35 Probe Set = Contig3326_s_at, HS08M08u_s_at, HW03M24u_at Description for best rice BLAST hit to Unigene 35 member = protein serine/threonine-protein kinase MAK, putative, expressed; E value = 0 BLAST hit in the rice genome = serine/threonine-protein kinase MAK, putative, expressed
Probe for Locus	HAR35_1176
Locus	POPA1_1433
Synonym	Synonym CDO545
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare