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GrainGenes Marker Report: POPA1_1443

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Locus
POPA1_1443
Type
SNP
Synonym
Other name12_11443
BOPA2_12_11443
Synonym12_11443
Chromosome
1H
Chromosome Arm
1HL
Map
Barley, 2012 9KSNP 1H117.8
Hordeum-OPA-2009-1H123.75
Hordeum-OPA123-2008-1H123.75
Hordeum-OPAConsensus-2011-1H125.29
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_3602
i_12_11443
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_1443
Marker name in barley OPA1 = 12_11443
Original SNP name = ConsensusGBS0103-1
Most representative HarvEST:Barley Assembly #32 Unigene = 6531
Most representative HarvEST:Barley Assembly #35 Unigene = 3602
HarvEST Unigene 35 Probe Set = Contig9195_at
Unigene 35 Rice Locus = LOC_Os05g48820
Description for best rice BLAST hit to Unigene 35 member = DDT domain containing protein, expressed; E value = 0
Marker name in barley OPA2 = 12_11443
Description for best rice BLAST hit to Unigene 35 member = protein DDT domain containing protein, expressed; E value = 0
BLAST hit in the rice genome = DDT domain containing protein, expressed


Probe for Locus
HAR35_3602
Locus
POPA1_1443
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare