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GrainGenes Marker Report: POPA1_1449

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Locus	POPA1_1449
Type	SNP
Synonym	Other name 12_11449 BOPA2_12_11449 Synonym 12_11449
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPA-2009-2H 75.18 Hordeum-OPA123-2008-2H 75.18 Hordeum-OPAConsensus-2011-2H 86.58
	[ Show Nearby Loci ]
QTL with Locus Marker	MQTL_Du2024.yield-2H.9
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_21218 i_12_11449
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_1449 Marker name in barley OPA1 = 12_11449 Original SNP name = ConsensusGBS0143-1 Most representative HarvEST:Barley Assembly #32 Unigene = 11347 Most representative HarvEST:Barley Assembly #35 Unigene = 21218 HarvEST Unigene 35 Probe Set = Contig14898_at Unigene 35 Rice Locus = LOC_Os04g43160 Description for best rice BLAST hit to Unigene 35 member = TPR domain protein, putative, expressed; E value = 2E-53 Marker name in barley OPA2 = 12_11449 Description for best rice BLAST hit to Unigene 35 member = protein TPR domain protein, putative, expressed; E value = 2E-53 BLAST hit in the rice genome = TPR domain protein, putative, expressed
Probe for Locus	HAR35_21218
Locus	POPA1_1449
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare