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GrainGenes Marker Report: POPA1_1461

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Locus	POPA1_1461
Type	SNP
Synonym	Other name 11_11461 BOPA1_11_11461 BOPA1_ConsensusGBS0250-2 Synonym 11_11461
Chromosome	7H
Chromosome Arm	7HL
Map	Hordeum-OPA-2009-7H 82.34 Hordeum-OPA123-2008-7H 82.34 Hordeum-OPAConsensus-2011-7H 83.42 Hordeum-OWB-OPA2008-7H 87.36
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_1261 i_11_11461
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_1461 Marker name in barley OPA1 = 11_11461 Original SNP name = ConsensusGBS0250-2 Most representative HarvEST:Barley Assembly #32 Unigene = 2736 Most representative HarvEST:Barley Assembly #35 Unigene = 1261 HarvEST Unigene 35 Probe Set = Contig3935_s_at; HS06C20u_s_at Unigene 35 Rice Locus = LOC_Os06g30750 Description for best rice BLAST hit to Unigene 35 member = reticulon, putative, expressed; E value = 1E-121 HarvEST Unigene 35 Probe Set = Contig3935_s_at, HS06C20u_s_at Description for best rice BLAST hit to Unigene 35 member = protein reticulon, putative, expressed; E value = 1E-121 BLAST hit in the rice genome = reticulon, putative, expressed
Probe for Locus	HAR35_1261
Locus	POPA1_1461
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare