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GrainGenes Marker Report: POPA1_1464

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Locus	POPA1_1464
Type	SNP
Synonym	Synonym 11_11464
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPA-2009-5H 161.58 Hordeum-OPA123-2008-5H 161.58 Hordeum-OPAConsensus-2011-5H 158.28 Hordeum-OWB-OPA2008-5H 196.153
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_5775
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_1464 Marker name in barley OPA1 = 11_11464 Original SNP name = ConsensusGBS0269-1 Most representative HarvEST:Barley Assembly #32 Unigene = 10260 Most representative HarvEST:Barley Assembly #35 Unigene = 5775 HarvEST Unigene 35 Probe Set = Contig13206_at; HK03H05r_s_at Unigene 35 Rice Locus = LOC_Os03g60190 Description for best rice BLAST hit to Unigene 35 member = DNA repair protein, putative, expressed; E value = 1E-109 HarvEST Unigene 35 Probe Set = Contig13206_at, HK03H05r_s_at Description for best rice BLAST hit to Unigene 35 member = protein DNA repair protein, putative, expressed; E value = 1E-109 BLAST hit in the rice genome = DNA repair protein, putative, expressed
Probe for Locus	HAR35_5775
Locus	POPA1_1464
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare