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GrainGenes Marker Report: POPA1_1468

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Locus	POPA1_1468
Type	SNP
Synonym	Other name 12_11468 BOPA2_12_11468 Synonym 12_11468
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_16010 i_12_11468
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_1468 Marker name in barley OPA1 = 12_11468 Original SNP name = ConsensusGBS0284-1 Most representative HarvEST:Barley Assembly #32 Unigene = 3514 Most representative HarvEST:Barley Assembly #35 Unigene = 16010 HarvEST Unigene 35 Probe Set = Contig4994_at; Contig4994_s_at; HW06C04u_s_at Unigene 35 Rice Locus = LOC_Os01g59900 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 1E-112 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_16010
Locus	POPA1_1468