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GrainGenes Marker Report: POPA1_1470

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Locus	POPA1_1470
Type	SNP
Synonym	Other name 11_11470 BOPA1_11_11470 BOPA1_ConsensusGBS0288-1 Synonym 11_11470
Chromosome	4H
Chromosome Arm	4HL
Map	Barley, 2012 9KSNP 4H 99.6 Hordeum-OPA-2009-4H 100.74 Hordeum-OPA123-2008-4H 100.74 Hordeum-OPAConsensus-2011-4H 111.13
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_18023 i_11_11470
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_1470 Marker name in barley OPA1 = 11_11470 Original SNP name = ConsensusGBS0288-1 Most representative HarvEST:Barley Assembly #32 Unigene = 6612 Most representative HarvEST:Barley Assembly #35 Unigene = 18023 HarvEST Unigene 35 Probe Set = Contig8880_at Unigene 35 Rice Locus = LOC_Os03g03830 Description for best rice BLAST hit to Unigene 35 member = calcium ion binding protein, putative, expressed; E value = 2E-97 Description for best rice BLAST hit to Unigene 35 member = protein calcium ion binding protein, putative, expressed; E value = 2E-97 BLAST hit in the rice genome = calcium ion binding protein, putative, expressed
Probe for Locus	HAR35_18023
Locus	POPA1_1470
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare