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GrainGenes Marker Report: POPA1_1477

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Locus	POPA1_1477
Type	SNP
Synonym	Other name 12_11477 BOPA2_12_11477 Synonym 12_11477
Chromosome	7H
Chromosome Arm	7HO
Map	Hordeum-OPA-2009-7H 78.22 Hordeum-OPA123-2008-7H 78.22 Hordeum-OPAConsensus-2011-7H 81.78
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_15340 i_12_11477
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_1477 Marker name in barley OPA1 = 12_11477 Original SNP name = ConsensusGBS0340-1 Most representative HarvEST:Barley Assembly #32 Unigene = 2134 Most representative HarvEST:Barley Assembly #35 Unigene = 15340 HarvEST Unigene 35 Probe Set = Contig3118_at; HA10C11r_at; HA10C11r_x_at Unigene 35 Rice Locus = LOC_Os05g23620 Description for best rice BLAST hit to Unigene 35 member = cytochrome c1, heme protein, mitochondrial precursor, putative, expressed; E value = 1E-166 Marker name in barley OPA2 = 12_11477 HarvEST Unigene 35 Probe Set = Contig3118_at, HA10C11r_at, HA10C11r_x_at Description for best rice BLAST hit to Unigene 35 member = protein cytochrome c1, heme protein, mitochondrial precursor, putative, expressed; E value = 1E-166 BLAST hit in the rice genome = cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
Probe for Locus	HAR35_15340
Locus	POPA1_1477
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare