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GrainGenes Marker Report: POPA1_1480

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Locus	POPA1_1480
Type	SNP
Synonym	Other name 11_11480 BOPA1_11_11480 BOPA1_ConsensusGBS0348-2 Synonym 11_11480
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPA-2009-2H 108.61 Hordeum-OPA123-2008-2H 108.61 Hordeum-OPAConsensus-2011-2H 118.39
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_14249 i_11_11480
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_1480 Marker name in barley OPA1 = 11_11480 Original SNP name = ConsensusGBS0348-2 Most representative HarvEST:Barley Assembly #32 Unigene = 875 Most representative HarvEST:Barley Assembly #35 Unigene = 14249 HarvEST Unigene 35 Probe Set = Contig1343_at; HA08f06r_s_at Unigene 35 Rice Locus = LOC_Os04g51630 Description for best rice BLAST hit to Unigene 35 member = 60S ribosomal protein L7-2, putative, expressed; E value = 1E-123 HarvEST Unigene 35 Probe Set = Contig1343_at, HA08f06r_s_at Description for best rice BLAST hit to Unigene 35 member = protein 60S ribosomal protein L7-2, putative, expressed; E value = 1E-123 BLAST hit in the rice genome = 60S ribosomal protein L7-2, putative, expressed
Probe for Locus	HAR35_14249
Locus	POPA1_1480
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare