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GrainGenes Marker Report: POPA1_1484

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Locus
POPA1_1484
Type
SNP
Synonym
Other name11_11484
BOPA1_11_11484
BOPA1_ConsensusGBS0371-2
Synonym11_11484
Chromosome
1H
Chromosome Arm
1HL
Map
Hordeum-OPA-2009-1H51.23
Hordeum-OPA123-2008-1H51.23
Hordeum-OPAConsensus-2011-1H44.17
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_16897
i_11_11484
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ]
Marker name in barley Pilot OPA1 = 1_1484
Marker name in barley OPA1 = 11_11484
Original SNP name = ConsensusGBS0371-2
Most representative HarvEST:Barley Assembly #32 Unigene = 5736
Most representative HarvEST:Barley Assembly #35 Unigene = 16897
HarvEST Unigene 35 Probe Set = Contig7861_at
Unigene 35 Rice Locus = LOC_Os10g36760
Description for best rice BLAST hit to Unigene 35 member = prolyl carboxypeptidase like protein, putative, expressed; E value = 0
Description for best rice BLAST hit to Unigene 35 member = protein prolyl carboxypeptidase like protein, putative, expressed; E value = 0
BLAST hit in the rice genome = prolyl carboxypeptidase like protein, putative, expressed


Probe for Locus
HAR35_16897
Locus
POPA1_1484
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare