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GrainGenes Marker Report: POPA1_1485

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Locus	POPA1_1485
Type	SNP
Synonym	Other name 12_11485 BOPA2_12_11485 Synonym 12_11485
Chromosome	4H
Chromosome Arm	4HS
Map	Hordeum-OPA-2009-4H 11.27 Hordeum-OPA123-2008-4H 11.27 Hordeum-OPAConsensus-2011-4H 10.77 Hordeum-OWB-OPA2008-4H 15.881
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_2803 i_12_11485
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_1485 Marker name in barley OPA1 = 12_11485 Original SNP name = ConsensusGBS0372-1 Most representative HarvEST:Barley Assembly #32 Unigene = 5000 Most representative HarvEST:Barley Assembly #35 Unigene = 2803 HarvEST Unigene 35 Probe Set = Contig6921_s_at Unigene 35 Rice Locus = LOC_Os03g46390 Description for best rice BLAST hit to Unigene 35 member = ras-related protein RHN1, putative, expressed; E value = 1E-103 Marker name in barley OPA2 = 12_11485 Description for best rice BLAST hit to Unigene 35 member = protein ras-related protein RHN1, putative, expressed; E value = 1E-103 BLAST hit in the rice genome = ras-related protein RHN1, putative, expressed
Probe for Locus	HAR35_2803
Locus	POPA1_1485
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare