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GrainGenes Marker Report: POPA1_1489

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Locus	POPA1_1489
Type	SNP
Synonym	Other name 11_11489 BOPA1_11_11489 BOPA1_ConsensusGBS0390-11 Synonym 11_11489
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_2660 i_11_11489
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_1489 Marker name in barley OPA1 = 11_11489 Original SNP name = ConsensusGBS0390-11 Most representative HarvEST:Barley Assembly #32 Unigene = 7369 Most representative HarvEST:Barley Assembly #35 Unigene = 2660 HarvEST Unigene 35 Probe Set = Contig15072_at; Contig9584_at Unigene 35 Rice Locus = LOC_Os03g61600 Description for best rice BLAST hit to Unigene 35 member = phosphoribosylformylglycinamidine cyclo-ligase,chloroplast/mitochondrial precursor,; E value = 1E-172 BLAST hit in the rice genome = phosphoribosylformylglycinamidine cyclo-ligase,chloroplast/mitochondrial precursor,
Probe for Locus	HAR35_2660
Locus	POPA1_1489