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GrainGenes Marker Report: POPA1_1490

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Locus
POPA1_1490
Type
SNP
Synonym
Other name11_11490
BOPA1_11_11490
BOPA1_ConsensusGBS0397-16
Synonym11_11490
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H153.6
Hordeum-OPA123-2008-5H153.6
Hordeum-OPAConsensus-2011-5H150.29
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_2368
i_11_11490
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_1490
Marker name in barley OPA1 = 11_11490
Original SNP name = ConsensusGBS0397-16
Most representative HarvEST:Barley Assembly #32 Unigene = 4316
Most representative HarvEST:Barley Assembly #35 Unigene = 2368
HarvEST Unigene 35 Probe Set = Contig5911_at; Contig5911_s_at
Unigene 35 Rice Locus = LOC_Os07g08880
Description for best rice BLAST hit to Unigene 35 member = SHL1, putative, expressed; E value = 1E-100
HarvEST Unigene 35 Probe Set = Contig5911_at, Contig5911_s_at
Description for best rice BLAST hit to Unigene 35 member = protein SHL1, putative, expressed; E value = 1E-100
BLAST hit in the rice genome = SHL1, putative, expressed


Probe for Locus
HAR35_2368
Locus
POPA1_1490
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare