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GrainGenes Marker Report: POPA1_1493

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Locus	POPA1_1493
Type	SNP
Synonym	Other name 12_11493 BOPA2_12_11493 Synonym 12_11493
Chromosome	2H
Chromosome Arm	2HS
Map	Hordeum-OPA-2009-2H 45.55 Hordeum-OPA123-2008-2H 45.55 Hordeum-OPAConsensus-2011-2H 46.74 Hordeum-OWB-OPA2008-2H 56.301
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_1603 i_12_11493
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_1493 Marker name in barley OPA1 = 12_11493 Original SNP name = ConsensusGBS0428-3 Most representative HarvEST:Barley Assembly #32 Unigene = 3194 Most representative HarvEST:Barley Assembly #35 Unigene = 1603 HarvEST Unigene 35 Probe Set = Contig4526_s_at; Contig4527_x_at; Contig4529_s_at Unigene 35 Rice Locus = LOC_Os07g46830 Description for best rice BLAST hit to Unigene 35 member = sex determination protein tasselseed-2, putative, expressed; E value = 1E-134 Marker name in barley OPA2 = 12_11493 HarvEST Unigene 35 Probe Set = Contig4526_s_at, Contig4527_x_at, Contig4529_s_at Description for best rice BLAST hit to Unigene 35 member = protein sex determination protein tasselseed-2, putative, expressed; E value = 1E-134 BLAST hit in the rice genome = sex determination protein tasselseed-2, putative, expressed
Probe for Locus	HAR35_1603
Locus	POPA1_1493
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare