Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_1505

[Submit comment/correction]

Locus	POPA1_1505
Type	SNP
Synonym	Other name 11_11505 BOPA1_11_11505 BOPA1_ConsensusGBS0524-2 Synonym 11_11505
Chromosome	2H
Chromosome Arm	2HS
Map	Hordeum-OPA-2009-2H 49.07 Hordeum-OPA123-2008-2H 49.07 Hordeum-OPAConsensus-2011-2H 51.87 Hordeum-OWB-OPA2008-2H 62.896
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_1361 i_11_11505
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_1505 Marker name in barley OPA1 = 11_11505 Original SNP name = ConsensusGBS0524-2 Most representative HarvEST:Barley Assembly #32 Unigene = 2704 Most representative HarvEST:Barley Assembly #35 Unigene = 1361 HarvEST Unigene 35 Probe Set = Contig3876_at Unigene 35 Rice Locus = LOC_Os07g45320 Description for best rice BLAST hit to Unigene 35 member = COX VIIa-like protein, putative, expressed; E value = 7E-25 Description for best rice BLAST hit to Unigene 35 member = protein COX VIIa-like protein, putative, expressed; E value = 7E-25 BLAST hit in the rice genome = COX VIIa-like protein, putative, expressed
Probe for Locus	HAR35_1361
Locus	POPA1_1505
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare