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GrainGenes Marker Report: POPA1_1506

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Locus	POPA1_1506
Type	SNP
Synonym	Other name 11_11506 BOPA1_11_11506 BOPA1_ConsensusGBS0527-5 Synonym 11_11506
Chromosome	5H
Chromosome Arm	5HL
Map	Barley, 2012 9KSNP 5H 44.8 Hordeum-OPA-2009-5H 51.6 Hordeum-OPA123-2008-5H 51.6 Hordeum-OPAConsensus-2011-5H 47.68
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_17357 i_11_11506
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_1506 Marker name in barley OPA1 = 11_11506 Original SNP name = ConsensusGBS0527-5 Most representative HarvEST:Barley Assembly #32 Unigene = 6341 Most representative HarvEST:Barley Assembly #35 Unigene = 17357 HarvEST Unigene 35 Probe Set = Contig8882_at Unigene 35 Rice Locus = LOC_Os12g02094 Description for best rice BLAST hit to Unigene 35 member = surfactant protein B containing protein, expressed; E value = 4E-79 Original SNP name = U32_776_772 Description for best rice BLAST hit to Unigene 35 member = protein surfactant protein B containing protein, expressed; E value = 4E-79 BLAST hit in the rice genome = surfactant protein B containing protein, expressed
Probe for Locus	HAR35_17357
Locus	POPA1_1506
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare