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GrainGenes Marker Report: POPA1_1508

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Locus	POPA1_1508
Type	SNP
Synonym	Other name 12_11508 BOPA2_12_11508 Synonym 12_11508
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_1322 i_12_11508
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_1508 Marker name in barley OPA1 = 12_11508 Original SNP name = ConsensusGBS0553-13 Most representative HarvEST:Barley Assembly #32 Unigene = 2843 Most representative HarvEST:Barley Assembly #35 Unigene = 1322 HarvEST Unigene 35 Probe Set = Contig4031_x_at Unigene 35 Rice Locus = LOC_Os06g05120 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 6E-29 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_1322
Locus	POPA1_1508