GrainGenes Marker Report: POPA1_1510
Locus
POPA1_1510
Type
SNP
Synonym
Synonym 12_11510
Chromosome
3H
Chromosome Arm
3HL
Map
Hordeum-OPA-2009-3H 160.08 Hordeum-OPA123-2008-3H 160.08 Hordeum-OPAConsensus-2011-3H 162.17
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe
HAR35_17078
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_1510 Marker name in barley OPA1 = 12_11510 Original SNP name = ConsensusGBS0574-5 Most representative HarvEST:Barley Assembly #32 Unigene = 4621 Most representative HarvEST:Barley Assembly #35 Unigene = 17078 HarvEST Unigene 35 Probe Set = HVSMEf0021H03r2_s_at Unigene 35 Rice Locus = LOC_Os01g72009 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 3E-23 Marker name in barley OPA2 = 12_11510 Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 3E-23 BLAST hit in the rice genome = expressed protein
Probe for Locus
HAR35_17078
Locus
POPA1_1510
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA1_1510
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