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GrainGenes Marker Report: POPA1_1511

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Locus	POPA1_1511
Type	SNP
Synonym	Other name 12_11511 BOPA2_12_11511 Synonym 12_11511
Chromosome	3H
Chromosome Arm	3HS
Map	Hordeum-OPA-2009-3H 51.73 Hordeum-OPA123-2008-3H 51.73 Hordeum-OPAConsensus-2011-3H 61.94 Hordeum-OWB-OPA2008-3H 58.579
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_17738 i_12_11511
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_1511 Marker name in barley OPA1 = 12_11511 Original SNP name = ConsensusGBS0587-1 Most representative HarvEST:Barley Assembly #32 Unigene = 6653 Most representative HarvEST:Barley Assembly #35 Unigene = 17738 HarvEST Unigene 35 Probe Set = Contig8772_s_at; Contig8773_at Unigene 35 Rice Locus = LOC_Os01g12880 Description for best rice BLAST hit to Unigene 35 member = VHS and GAT domain protein, putative, expressed; E value = 4E-78 Marker name in barley OPA2 = 12_11511 HarvEST Unigene 35 Probe Set = Contig8772_s_at, Contig8773_at Description for best rice BLAST hit to Unigene 35 member = protein VHS and GAT domain protein, putative, expressed; E value = 4E-78 BLAST hit in the rice genome = VHS and GAT domain protein, putative, expressed
Probe for Locus	HAR35_17738
Locus	POPA1_1511
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare