GrainGenes Marker Report: POPA1_1514
Locus
POPA1_1514
Type
SNP
Chromosome
3H
Chromosome Arm
3HS
Map
Barley-Core-2014_3H 52.04 Hordeum-OPA-2009-3H 43.23 Hordeum-OPA123-2008-3H 43.23 Hordeum-OPAConsensus-2011-3H 48.13
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_15806
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_1514 Most representative HarvEST:Barley Assembly #32 Unigene = 3387 Most representative HarvEST:Barley Assembly #35 Unigene = 15806 HarvEST Unigene 35 Probe Set = Contig4768_s_at Unigene 35 Rice Locus = LOC_Os01g34700 Description for best rice BLAST hit to Unigene 35 member = protein usf, putative, expressed; E value = 2E-76 Original SNP name = ConsensusGBS0598-1 Description for best rice BLAST hit to Unigene 35 member = protein protein usf, putative, expressed; E value = 2E-76 BLAST hit in the rice genome = protein usf, putative, expressed
Probe for Locus
HAR35_15806
Locus
POPA2_1533 POPA1_1514
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA1_1514
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