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GrainGenes Marker Report: POPA1_1515

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Locus	POPA1_1515
Type	SNP
Synonym	Other name 12_11515 BOPA2_12_11515 Synonym 12_11515
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPA-2009-5H 85.93 Hordeum-OPA123-2008-5H 85.93 Hordeum-OPAConsensus-2011-5H 72.68 Hordeum-OWB-OPA2008-5H 96.06
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_2045 i_12_11515
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_1515 Marker name in barley OPA1 = 12_11515 Original SNP name = ConsensusGBS0613-8 Most representative HarvEST:Barley Assembly #32 Unigene = 4390 Most representative HarvEST:Barley Assembly #35 Unigene = 2045 HarvEST Unigene 35 Probe Set = Contig6032_s_at; Contig6033_at; HS07O05u_s_at Unigene 35 Rice Locus = LOC_Os09g28050 Marker name in barley OPA2 = 12_11515 HarvEST Unigene 35 Probe Set = Contig6032_s_at, Contig6033_at, HS07O05u_s_at Description for best rice BLAST hit to Unigene 35 member = protein asparate aminotransferase, putative, expressed; E value = 0 BLAST hit in the rice genome = asparate aminotransferase, putative, expressed
Probe for Locus	HAR35_2045
Locus	POPA2_0736 POPA1_1515
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare