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GrainGenes Marker Report: POPA1_1521

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Locus	POPA1_1521
Type	SNP
Synonym	Synonym 11_11521
Chromosome	7H
Chromosome Arm	7HL
Map	Hordeum-OPA-2009-7H 127.45 Hordeum-OPA123-2008-7H 127.45 Hordeum-OPAConsensus-2011-7H 127.74
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_6638
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_1521 Marker name in barley OPA1 = 11_11521 Original SNP name = ConsensusGBS0647-4 Most representative HarvEST:Barley Assembly #32 Unigene = 10692 Most representative HarvEST:Barley Assembly #35 Unigene = 6638 HarvEST Unigene 35 Probe Set = Contig13813_at; EBed02_SQ002_H23_s_at Unigene 35 Rice Locus = LOC_Os01g52190 Description for best rice BLAST hit to Unigene 35 member = aspartic proteinase nepenthesin-1 precursor, putative; E value = 3E-39 HarvEST Unigene 35 Probe Set = Contig13813_at, EBed02_SQ002_H23_s_at Description for best rice BLAST hit to Unigene 35 member = protein aspartic proteinase nepenthesin-1 precursor, putative; E value = 3E-39 BLAST hit in the rice genome = aspartic proteinase nepenthesin-1 precursor, putative
Probe for Locus	HAR35_6638
Locus	POPA1_1521 POPA2_1535
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare