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GrainGenes Marker Report: POPA1_1522

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Locus	POPA1_1522
Type	SNP
Synonym	Synonym 11_11522
Chromosome	2H
Chromosome Arm	2HS
Map	Hordeum-OPA-2009-2H 53.53 Hordeum-OPA123-2008-2H 53.53 Hordeum-OPAConsensus-2011-2H 58.15 Hordeum-OWB-OPA2008-2H 68.379
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_6634
Reference	Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_1522 Marker name in barley OPA1 = 11_11522 Original SNP name = ConsensusGBS0651-2 Most representative HarvEST:Barley Assembly #32 Unigene = 11567 Most representative HarvEST:Barley Assembly #35 Unigene = 6634 HarvEST Unigene 35 Probe Set = Contig14463_at Unigene 35 Rice Locus = LOC_Os09g30010 Description for best rice BLAST hit to Unigene 35 member = fasciclin-like arabinogalactan protein 8 precursor, putative, expressed; E value = 3E-19 Description for best rice BLAST hit to Unigene 35 member = protein fasciclin-like arabinogalactan protein 8 precursor, putative, expressed; E value = 3E-19 BLAST hit in the rice genome = fasciclin-like arabinogalactan protein 8 precursor, putative, expressed
Probe for Locus	HAR35_6634
Locus	POPA1_1522
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare