GrainGenes Marker Report: POPA1_1523
Locus
POPA1_1523
Type
SNP
Synonym
Synonym bcd1087 BCD1381
Chromosome
5H
Chromosome Arm
5HL
Map
Barley-Core-2014_5H 44.99 Hordeum-OPA-2009-5H 60.03 Hordeum-OPA123-2008-5H 60.03 Hordeum-OPAConsensus-2011-5H 52.11 Hordeum-OWB-OPA2008-5H 67.095
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008 Barley, USDA Core, 2014 Consensus
Probe
HAR35_854
Reference
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_1523 Most representative HarvEST:Barley Assembly #32 Unigene = 1952 Most representative HarvEST:Barley Assembly #35 Unigene = 854 HarvEST Unigene 35 Probe Set = Contig2881_at; Contig2881_s_at Unigene 35 Rice Locus = LOC_Os09g17730 Description for best rice BLAST hit to Unigene 35 member = proton pump interactor, putative, expressed; E value = 0 Original SNP name = ConsensusGBS0653-2 HarvEST Unigene 35 Probe Set = Contig2881_at, Contig2881_s_at Description for best rice BLAST hit to Unigene 35 member = protein proton pump interactor, putative, expressed; E value = 0 BLAST hit in the rice genome = proton pump interactor, putative, expressed
Probe for Locus
HAR35_854
Locus
POPA1_1523 POPA2_0271
Synonym
Synonym BCD1087 BCD1381
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA1_1523
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