Query (optional)   in Class  

GrainGenes Marker Report: POPA1_1525

[Submit comment/correction]

Locus
POPA1_1525
Type
SNP
Synonym
Other name12_11525
BOPA2_12_11525
Synonym12_11525
Chromosome
7H
Chromosome Arm
7HS
Map
Hordeum-OPA-2009-7H68.46
Hordeum-OPA123-2008-7H68.46
Hordeum-OPAConsensus-2011-7H61.67
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_27859
i_12_11525
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_1525
Marker name in barley OPA1 = 12_11525
Original SNP name = ConsensusGBS0664-1
Most representative HarvEST:Barley Assembly #32 Unigene = 22856
Most representative HarvEST:Barley Assembly #35 Unigene = 27859
HarvEST Unigene 35 Probe Set = Contig26356_at
Unigene 35 Rice Locus = LOC_Os06g36180
Description for best rice BLAST hit to Unigene 35 member = amino acid transporter, putative, expressed; E value = 3E-69
Marker name in barley OPA2 = 12_11525
Description for best rice BLAST hit to Unigene 35 member = protein amino acid transporter, putative, expressed; E value = 3E-69
BLAST hit in the rice genome = amino acid transporter, putative, expressed


Probe for Locus
HAR35_27859
Locus
POPA1_1525
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare