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GrainGenes Marker Report: POPA1_1529

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Locus	POPA1_1529
Type	SNP
Synonym	Other name 12_11529 BOPA2_12_11529 Synonym 12_11529
Chromosome	7H
Chromosome Arm	7HL
Map	Hordeum-OPA-2009-7H 84.92 Hordeum-OPA123-2008-7H 84.92 Hordeum-OPAConsensus-2011-7H 85.28
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_19506 i_12_11529
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_1529 Marker name in barley OPA1 = 12_11529 Original SNP name = ConsensusGBS0693-4 Most representative HarvEST:Barley Assembly #32 Unigene = 8725 Most representative HarvEST:Barley Assembly #35 Unigene = 19506 HarvEST Unigene 35 Probe Set = Contig11318_at Unigene 35 Rice Locus = LOC_Os01g42530 Description for best rice BLAST hit to Unigene 35 member = GTP-binding nuclear protein Ran-2, putative, expressed; E value = 1E-111 Marker name in barley OPA2 = 12_11529 Description for best rice BLAST hit to Unigene 35 member = protein GTP-binding nuclear protein Ran-2, putative, expressed; E value = 1E-111 BLAST hit in the rice genome = GTP-binding nuclear protein Ran-2, putative, expressed
Probe for Locus	HAR35_19506
Locus	POPA1_1529
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare